IMPROVE
Contents:
What is the IMPROVE project?
Background
Future Directions
Acknowledgments
Installation
Quickstart
Applications
Drug Response Prediction
Problem Formulation
Benchmark Data
Models
GraphDRP
tCNNS
DeepTTC
IGTD
HiDRA
PaccMann-MCA
DualGCN
DeepCDR
PathDSP
LGBM
Uno
Synergy
Problem Formulation
Benchmark Data
Models
IMPROVE API
Preprocess
Train
Infer
Utility Functions
Creating Model-Specific Parameters
Configuration Files
Curating Models
Curating Steps
Step-by-Step Example
Templates
Preprocessing
Training
Inference
Model Parameters
Config File
Readme
Download Scripts
Requirements for Curated Models
Using Models with Workflows
Running a Single Model
Building Containers
CSA
Brute-Force CSA
Scaling CSA
Swarm CSA
Post-process CSA Results
HPO
Hyper Parameter Optimization (HPO) with Supervisor
HPO Prerequisites
DeepHyper HPO
LCA
Brute-Force LCA
Swarm LCA
Post-process LCA Results
Developer Guide
Creating a Workflow
Creating an Application
Release Notes
v0.1.0
v0.0.3
Branch Naming
Publications
Contact Us
IMPROVE
Applications
Synergy
Synergy Prediction
View page source
Synergy Prediction
Modeling drug synergy
Data
Screening data
Feature representations
Raw DRP data
ML data
Version: latest
Versions
latest
v0.0.3-beta
v0.1.0-alpha